RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os09g31140.1 View Network Show in Genome Browser
Other Names	Os09g0485600,Os09g0485500
Description	ZOS9-16 - C2H2 zinc finger protein, expressed
Gene Attributes	Chromosome: Chr9 CDS Coordinates (5'-3'): 18735015-18739476 Nucleotide Length: 867
Protein-coding	LOC_Os09g31140

Gene Ontology Classification
GO	Name	Type	Code
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0009653	anatomical structure morphogenesis	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0030154	cell differentiation	Biological Process	IEA
GO:0016049	cell growth	Biological Process	IEA
GO:0016049	cell growth	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0009908	flower development	Biological Process	IEA
GO:0009908	flower development	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0007275	multicellular organismal development	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0009856	pollination	Biological Process	IEA
GO:0009856	pollination	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0003676	nucleic acid binding	Molecular Function	IEA
GO:0003676	nucleic acid binding	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0003700	sequence-specific DNA binding transcription factor activity	Molecular Function	IEA
GO:0005634	nucleus	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os05g05860 LOC_Os03g17590 LOC_Os01g70310 LOC_Os01g27730 LOC_Os02g56740 LOC_Os04g08340 LOC_Os08g01930 LOC_Os06g16260
Downstream Genes	LOC_Os11g40500

miRNA Regulations
miRNAs	osa-miR5801

Database Links
Gramene	LOC_Os09g31140.1
Rice Genome Annotation	LOC_Os09g31140.1
Ricechip	LOC_Os09g31140.1
KEGG	osa:4347420 osa:4347419 dosa:Os09t0485600-01 dosa:Os09t0485500-01
Entrez-Gene	4347420