RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g31380.1 View Network Show in Genome Browser |
| Other Names | Os09g0489200 |
| Description | jmjC domain-containing protein 5, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 18863285-18867497 Nucleotide Length: 1197 |
| Protein-coding | LOC_Os09g31380 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g58210 LOC_Os03g31594 LOC_Os03g22540 LOC_Os01g67970 LOC_Os05g23670 LOC_Os05g10770 LOC_Os08g12830 LOC_Os06g51460 |
| Downstream Genes | LOC_Os10g42690 LOC_Os12g02820 LOC_Os11g03050 LOC_Os10g24810 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g31380.1 |
| Rice Genome Annotation | LOC_Os09g31380.1 |
| Ricechip | LOC_Os09g31380.1 |
| KEGG | osa:4347435 dosa:Os09t0489200-00 |
| Entrez-Gene | 4347435 |