RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g32820.1 View Network Show in Genome Browser |
| Other Names | Os09g0505800 |
| Description | uridine/cytidine kinase-like 1, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 19570000-19575614 Nucleotide Length: 1491 |
| Protein-coding | LOC_Os09g32820 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g21110 LOC_Os08g41790 LOC_Os07g25440 LOC_Os08g44370 LOC_Os01g25880 LOC_Os02g26850 LOC_Os02g02360 LOC_Os03g58810 LOC_Os06g41360 LOC_Os06g08770 LOC_Os02g49270 More.. |
| Downstream Genes | LOC_Os12g07300 LOC_Os09g39440 LOC_Os10g35280 LOC_Os09g37860 LOC_Os10g35290 LOC_Os12g04010 LOC_Os12g36950 LOC_Os11g04200 LOC_Os10g31520 LOC_Os12g29660 LOC_Os12g03822 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00710 rn01100 rn01120 rn00770 rn00240 rn00983 |
| Metacyc Pathways | CALVIN-PWY COA-PWY P1-PWY PWY0-163 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g32820.1 |
| Rice Genome Annotation | LOC_Os09g32820.1 |
| Ricechip | LOC_Os09g32820.1 |
| KEGG | osa:4347509 dosa:Os09t0505800-01 |
| Entrez-Gene | 4347509 |