RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g33930.5 View Network Show in Genome Browser |
| Other Names | Os09g0514400 |
| Description | farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 20023947-20027482 Nucleotide Length: 804 |
| Protein-coding | LOC_Os09g33930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g53600 LOC_Os08g40140 LOC_Os01g05680 LOC_Os02g45650 LOC_Os04g51380 LOC_Os02g36710 LOC_Os08g43130 LOC_Os05g28950 LOC_Os03g06670 LOC_Os03g15650 LOC_Os02g20410 More.. |
| Downstream Genes | LOC_Os12g37590 LOC_Os11g42420 LOC_Os12g42150 LOC_Os10g28230 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1436 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g33930.5 |
| Rice Genome Annotation | LOC_Os09g33930.5 |
| Ricechip | LOC_Os09g33930.5 |
| KEGG | osa:4347566 dosa:Os09t0514400-01 |
| Entrez-Gene | 4347566 |