RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g34040.1 View Network Show in Genome Browser |
| Other Names | Os09g0515800 |
| Description | TBC domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 20086611-20090593 Nucleotide Length: 1335 |
| Protein-coding | LOC_Os09g34040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g12730 LOC_Os07g09680 LOC_Os05g44050 LOC_Os08g25010 LOC_Os02g48000 LOC_Os07g31370 LOC_Os03g09140 LOC_Os07g13530 LOC_Os04g53690 LOC_Os03g60530 LOC_Os05g38630 More.. |
| Downstream Genes | LOC_Os11g07910 LOC_Os12g36760 LOC_Os12g43550 LOC_Os09g39220 LOC_Os12g43670 LOC_Os11g07930 LOC_Os11g07922 LOC_Os10g42430 LOC_Os11g48020 LOC_Os11g25260 LOC_Os11g20384 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g34040.1 |
| Rice Genome Annotation | LOC_Os09g34040.1 |
| Ricechip | LOC_Os09g34040.1 |
| KEGG | osa:4347577 dosa:Os09t0515800-01 |
| Entrez-Gene | 4347577 |