RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g34060.1 View Network Show in Genome Browser |
| Other Names | Os09g0516200 |
| Description | transcription factor RF2a, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 20094122-20098653 Nucleotide Length: 1143 |
| Protein-coding | LOC_Os09g34060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g54474 LOC_Os02g49560 LOC_Os01g59350 LOC_Os02g52780 LOC_Os01g64730 LOC_Os01g64020 LOC_Os06g50310 LOC_Os06g41770 |
| Downstream Genes | LOC_Os11g05640 |
| Reference | |
|---|---|
| PubMed | 12855676 20408988 18065552 9311985 14704272 11971135 11390974 19104064 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g34060.1 |
| Rice Genome Annotation | LOC_Os09g34060.1 |
| Ricechip | LOC_Os09g34060.1 |
| KEGG | osa:4347578 dosa:Os09t0516200-01 |
| Entrez-Gene | 4347578 |