RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g34090.1 View Network Show in Genome Browser |
| Other Names | Os09g0516500 |
| Description | sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 20117440-20121733 Nucleotide Length: 1713 |
| Protein-coding | LOC_Os09g34090 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g57990 LOC_Os06g25439 LOC_Os02g57180 LOC_Os03g07140 LOC_Os06g44270 LOC_Os06g04620 LOC_Os07g10600 LOC_Os08g43170 LOC_Os06g44260 LOC_Os07g49120 LOC_Os04g10010 More.. |
| Downstream Genes | LOC_Os09g39410 LOC_Os11g48020 LOC_Os12g32240 LOC_Os09g34960 LOC_Os10g37420 LOC_Os10g01044 LOC_Os12g43670 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00052 rn00520 rn01100 rn01110 |
| Metacyc Pathways | PWY-2582 DTDPRHAMSYN-PWY UDPNACETYLGALSYN-PWY PWY-3821 P61-PWY GALACTMETAB-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g34090.1 |
| Rice Genome Annotation | LOC_Os09g34090.1 |
| Ricechip | LOC_Os09g34090.1 |
| KEGG | osa:4347580 dosa:Os09t0516500-00 |
| Entrez-Gene | 4347580 |