RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g35970.1 View Network Show in Genome Browser |
| Other Names | Os09g0529100 |
| Description | 6-phosphogluconolactonase, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 20724892-20727999 Nucleotide Length: 975 |
| Protein-coding | LOC_Os09g35970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g29950 LOC_Os03g20300 LOC_Os02g38840 LOC_Os07g22350 LOC_Os04g40874 LOC_Os08g38570 LOC_Os01g70170 LOC_Os06g02144 LOC_Os04g35090 LOC_Os02g34460 LOC_Os01g73160 More.. |
| Downstream Genes | LOC_Os11g29400 LOC_Os12g43664 LOC_Os12g25710 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5490 osa-miR2104 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00030 rn01100 rn01110 rn01120 |
| Metacyc Pathways | OXIDATIVEPENT-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g35970.1 |
| Rice Genome Annotation | LOC_Os09g35970.1 |
| Ricechip | LOC_Os09g35970.1 |
| KEGG | osa:4347654 dosa:Os09t0529100-01 |
| Entrez-Gene | 4347654 |