RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g36800.1 View Network Show in Genome Browser |
| Other Names | Os09g0539100 |
| Description | 3-dehydroquinate synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 21225954-21229391 Nucleotide Length: 1332 |
| Protein-coding | LOC_Os09g36800 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g51410 LOC_Os06g12150 LOC_Os04g54800 LOC_Os01g01302 LOC_Os03g17520 LOC_Os03g31690 LOC_Os07g24190 LOC_Os03g19930 LOC_Os07g39690 LOC_Os01g27750 LOC_Os02g47850 More.. |
| Downstream Genes | LOC_Os12g37610 LOC_Os11g02480 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5819 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00400 rn01100 rn01110 |
| Metacyc Pathways | ARO-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g36800.1 |
| Rice Genome Annotation | LOC_Os09g36800.1 |
| Ricechip | LOC_Os09g36800.1 |
| KEGG | osa:4347717 dosa:Os09t0539100-01 |
| Entrez-Gene | 4347717 |