RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g36830.1 View Network Show in Genome Browser |
| Other Names | Os09g0539500 |
| Description | Skp1 family, dimerisation domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 21243189-21245828 Nucleotide Length: 528 |
| Protein-coding | LOC_Os09g36830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g47870 LOC_Os07g49150 LOC_Os01g27160 LOC_Os03g18690 LOC_Os03g48930 LOC_Os06g09290 LOC_Os02g54340 LOC_Os06g07978 LOC_Os06g07878 LOC_Os06g07140 LOC_Os09g33986 More.. |
| Downstream Genes | LOC_Os11g42160 LOC_Os11g48030 LOC_Os11g28350 LOC_Os11g40140 LOC_Os09g39500 LOC_Os09g37000 LOC_Os12g31810 LOC_Os12g39210 LOC_Os11g26910 LOC_Os10g05800 LOC_Os10g41370 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g36830.1 |
| Rice Genome Annotation | LOC_Os09g36830.1 |
| Ricechip | LOC_Os09g36830.1 |
| KEGG | osa:4347721 dosa:Os09t0539500-01 |
| Entrez-Gene | 4347721 |