RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g37000.1 View Network Show in Genome Browser |
| Other Names | Os09g0541900 |
| Description | 26S proteasome non-ATPase regulatory subunit 3, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 21338761-21342208 Nucleotide Length: 1464 |
| Protein-coding | LOC_Os09g37000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g25420 LOC_Os03g63430 LOC_Os04g56646 LOC_Os06g09290 LOC_Os02g54340 LOC_Os04g40850 LOC_Os04g36700 LOC_Os02g38810 LOC_Os02g21970 LOC_Os07g49150 LOC_Os01g32800 More.. |
| Downstream Genes | LOC_Os11g04220 LOC_Os11g18170 LOC_Os11g40140 LOC_Os11g48030 LOC_Os12g04030 LOC_Os12g08740 LOC_Os11g26910 LOC_Os09g39500 LOC_Os11g28350 LOC_Os10g34030 LOC_Os12g03720 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR319a-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g37000.1 |
| Rice Genome Annotation | LOC_Os09g37000.1 |
| Ricechip | LOC_Os09g37000.1 |
| KEGG | osa:4347735 dosa:Os09t0541900-01 |
| Entrez-Gene | 4347735 |