RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g37120.1 View Network Show in Genome Browser |
| Other Names | Os09g0543400 |
| Description | pyridoxal-dependent decarboxylase protein, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 21409271-21410497 Nucleotide Length: 1227 |
| Protein-coding | LOC_Os09g37120 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g42090 LOC_Os02g39790 LOC_Os07g22600 LOC_Os09g25620 LOC_Os02g15550 LOC_Os06g33710 LOC_Os03g63490 LOC_Os01g12570 LOC_Os05g01310 LOC_Os05g05230 LOC_Os03g05300 More.. |
| Downstream Genes | LOC_Os10g38850 LOC_Os10g28040 LOC_Os12g40770 LOC_Os12g43940 LOC_Os12g40780 LOC_Os11g29690 LOC_Os12g01370 LOC_Os12g43840 LOC_Os11g01340 LOC_Os12g43370 LOC_Os12g37960 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00330 rn00480 rn01100 rn01110 |
| Metacyc Pathways | PWY-46 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g37120.1 |
| Rice Genome Annotation | LOC_Os09g37120.1 |
| Ricechip | LOC_Os09g37120.1 |
| KEGG | osa:4347746 dosa:Os09t0543400-00 |
| Entrez-Gene | 4347746 |