RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g37700.1 View Network Show in Genome Browser |
| Other Names | Os09g0549400 |
| Description | proteophosphoglycan ppg4, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 21727801-21731104 Nucleotide Length: 1278 |
| Protein-coding | LOC_Os09g37700 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g40820 LOC_Os08g41480 LOC_Os04g35940 LOC_Os03g18210 LOC_Os03g19520 LOC_Os09g37270 LOC_Os03g55470 LOC_Os01g54040 |
| Downstream Genes | LOC_Os11g38920 LOC_Os11g20554 LOC_Os12g01916 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR164a osa-miR164b osa-miR164c osa-miR164f osa-miR164d osa-miR164e |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g37700.1 |
| Rice Genome Annotation | LOC_Os09g37700.1 |
| Ricechip | LOC_Os09g37700.1 |
| KEGG | osa:4347778 dosa:Os09t0549400-01 |
| Entrez-Gene | 4347778 |