RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g37720.1 View Network Show in Genome Browser |
| Other Names | Os09g0549500 |
| Description | RNA recognition motif containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 21742603-21743594 Nucleotide Length: 825 |
| Protein-coding | LOC_Os09g37720 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g30020 LOC_Os08g03520 LOC_Os02g02870 LOC_Os03g61220 LOC_Os01g72834 LOC_Os06g11730 LOC_Os02g52460 LOC_Os09g29980 LOC_Os02g40460 LOC_Os08g40880 LOC_Os06g37000 More.. |
| Downstream Genes | LOC_Os10g39820 LOC_Os11g36480 LOC_Os11g41890 LOC_Os10g33230 LOC_Os12g43600 LOC_Os10g29560 LOC_Os10g11034 LOC_Os11g07490 LOC_Os11g04390 LOC_Os12g04180 LOC_Os10g31850 More.. |
| Reference | |
|---|---|
| PubMed | 22912901 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g37720.1 |
| Rice Genome Annotation | LOC_Os09g37720.1 |
| Ricechip | LOC_Os09g37720.1 |
| KEGG | osa:4347779 dosa:Os09t0549500-00 |
| Entrez-Gene | 4347779 |