RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g37860.1 View Network Show in Genome Browser |
| Other Names | Os09g0551300 |
| Description | NOL1/NOP2/sun family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 21828178-21833496 Nucleotide Length: 2100 |
| Protein-coding | LOC_Os09g37860 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g22740 LOC_Os03g22730 LOC_Os03g22880 LOC_Os04g42010 LOC_Os01g69970 LOC_Os03g56800 LOC_Os03g58720 LOC_Os03g22350 LOC_Os05g49150 LOC_Os03g25450 LOC_Os07g10350 More.. |
| Downstream Genes | LOC_Os11g07500 LOC_Os10g35280 LOC_Os10g42320 LOC_Os12g29660 LOC_Os12g13390 LOC_Os11g06750 LOC_Os12g07010 LOC_Os11g01420 LOC_Os12g21798 LOC_Os12g01430 LOC_Os12g06910 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR814a osa-miR814b osa-miR814c |
| Pathways | |
|---|---|
| KEGG Pathways | rn00380 rn00624 rn01120 rn00340 rn00350 rn00130 rn01100 rn01110 |
| Metacyc Pathways | PWY-4021 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g37860.1 |
| Rice Genome Annotation | LOC_Os09g37860.1 |
| Ricechip | LOC_Os09g37860.1 |
| KEGG | osa:4347787 dosa:Os09t0551300-02 |
| Entrez-Gene | 4347787 |