RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g37910.1 View Network Show in Genome Browser |
| Other Names | Os09g0551600 |
| Description | HMG1/2, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 21856872-21858954 Nucleotide Length: 420 |
| Protein-coding | LOC_Os09g37910 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003682 | chromatin binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g32270 LOC_Os03g18430 LOC_Os08g32620 LOC_Os09g21770 LOC_Os08g33100 LOC_Os07g36140 LOC_Os03g20720 LOC_Os03g51200 LOC_Os08g35860 LOC_Os07g36130 LOC_Os06g43790 More.. |
| Downstream Genes | LOC_Os12g34510 LOC_Os12g25120 LOC_Os10g39410 LOC_Os09g38020 LOC_Os12g39070 LOC_Os10g41450 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g37910.1 |
| Rice Genome Annotation | LOC_Os09g37910.1 |
| Ricechip | LOC_Os09g37910.1 |
| KEGG | osa:4347789 dosa:Os09t0551600-01 |
| Entrez-Gene | 4347789 |