RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g38320.1 View Network Show in Genome Browser |
| Other Names | Os09g0555500 |
| Description | phytoene synthase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 22041967-22045393 Nucleotide Length: 1335 |
| Protein-coding | LOC_Os09g38320 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g10490 LOC_Os02g52780 LOC_Os03g08570 LOC_Os06g51290 LOC_Os05g51670 LOC_Os03g62510 LOC_Os01g40190 LOC_Os05g49770 LOC_Os03g59040 LOC_Os04g47290 LOC_Os02g04710 More.. |
| Downstream Genes | LOC_Os12g43130 LOC_Os11g36440 LOC_Os12g43590 LOC_Os11g18366 LOC_Os11g35710 LOC_Os11g18194 LOC_Os11g08569 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5075 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00906 rn01100 rn01110 |
| Metacyc Pathways | CAROTENOID-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g38320.1 |
| Rice Genome Annotation | LOC_Os09g38320.1 |
| Ricechip | LOC_Os09g38320.1 |
| KEGG | osa:4347813 dosa:Os09t0555500-01 |
| Entrez-Gene | 4347813 |