RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g38340.1 View Network Show in Genome Browser |
| Other Names | Os09g0555700 |
| Description | ZOS9-17 - C2H2 zinc finger protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 22064454-22070492 Nucleotide Length: 1608 |
| Protein-coding | LOC_Os09g38340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g44050 LOC_Os02g58730 LOC_Os02g20850 LOC_Os02g02840 LOC_Os02g50860 LOC_Os06g12790 LOC_Os05g43820 LOC_Os01g12900 LOC_Os01g64960 LOC_Os08g30740 LOC_Os08g33820 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g38340.1 |
| Rice Genome Annotation | LOC_Os09g38340.1 |
| Ricechip | LOC_Os09g38340.1 |
| KEGG | osa:9272621 dosa:Os09t0555700-02 |
| Entrez-Gene | 9272621 |