RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g38420.1 View Network Show in Genome Browser |
| Other Names | Os09g0556500 |
| Description | cysteinyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 22114200-22119990 Nucleotide Length: 1710 |
| Protein-coding | LOC_Os09g38420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008219 | cell death | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g11120 LOC_Os09g10760 LOC_Os05g49060 LOC_Os06g43760 LOC_Os01g71230 LOC_Os07g33660 LOC_Os05g25400 LOC_Os05g05740 LOC_Os07g38300 LOC_Os01g48690 LOC_Os08g19610 More.. |
| Downstream Genes | LOC_Os11g13420 LOC_Os11g26160 LOC_Os12g35630 LOC_Os10g34180 LOC_Os11g32240 LOC_Os10g32550 LOC_Os10g41960 LOC_Os11g05730 LOC_Os12g34510 LOC_Os10g22380 LOC_Os10g27174 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2096-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g38420.1 |
| Rice Genome Annotation | LOC_Os09g38420.1 |
| Ricechip | LOC_Os09g38420.1 |
| KEGG | osa:4347821 dosa:Os09t0556500-01 |
| Entrez-Gene | 4347821 |