RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g38440.1 View Network Show in Genome Browser |
| Other Names | Os09g0556700 |
| Description | ATXR, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 22130437-22135245 Nucleotide Length: 2133 |
| Protein-coding | LOC_Os09g38440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0008289 | lipid binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g19520 LOC_Os07g38060 LOC_Os09g33450 LOC_Os08g44230 LOC_Os05g36090 LOC_Os04g55500 LOC_Os04g49560 LOC_Os04g47410 LOC_Os03g58960 LOC_Os03g24900 LOC_Os08g42370 More.. |
| Downstream Genes | LOC_Os10g35450 LOC_Os11g32960 LOC_Os10g19180 LOC_Os12g29560 LOC_Os09g38970 LOC_Os12g03730 LOC_Os11g03910 LOC_Os12g16210 LOC_Os11g34860 LOC_Os12g34350 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g38440.1 |
| Rice Genome Annotation | LOC_Os09g38440.1 |
| Ricechip | LOC_Os09g38440.1 |
| KEGG | osa:4347822 dosa:Os09t0556700-01 |
| Entrez-Gene | 4347822 |