RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g38580.1 View Network Show in Genome Browser |
| Other Names | Os09g0558300 |
| Description | cyclic nucleotide-gated ion channel, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 22192725-22197187 Nucleotide Length: 2142 |
| Protein-coding | LOC_Os09g38580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g01810 LOC_Os02g57710 LOC_Os03g54100 LOC_Os09g12790 LOC_Os04g55080 LOC_Os03g57450 LOC_Os03g57510 LOC_Os02g46090 LOC_Os04g49510 LOC_Os07g06740 LOC_Os02g58520 More.. |
| Downstream Genes | LOC_Os11g07040 LOC_Os12g07230 LOC_Os12g30150 LOC_Os10g39420 LOC_Os12g28260 LOC_Os12g19290 LOC_Os12g12860 LOC_Os12g06570 LOC_Os12g03970 LOC_Os11g04170 LOC_Os10g36710 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g38580.1 |
| Rice Genome Annotation | LOC_Os09g38580.1 |
| Ricechip | LOC_Os09g38580.1 |
| KEGG | osa:4347834 dosa:Os09t0558300-01 |
| Entrez-Gene | 4347834 |