RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g38790.1 View Network Show in Genome Browser |
| Other Names | Os09g0560900 |
| Description | ZOS9-19 - C2H2 zinc finger protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 22287174-22291746 Nucleotide Length: 1068 |
| Protein-coding | LOC_Os09g38790 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g10450 LOC_Os06g20390 LOC_Os02g32160 LOC_Os01g39630 LOC_Os06g19680 LOC_Os05g29870 LOC_Os03g33580 LOC_Os07g39950 LOC_Os03g53720 LOC_Os09g25430 LOC_Os03g22320 More.. |
| Downstream Genes | LOC_Os11g16540 LOC_Os10g17770 LOC_Os12g08260 LOC_Os10g35250 LOC_Os10g37630 LOC_Os10g41960 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g38790.1 |
| Rice Genome Annotation | LOC_Os09g38790.1 |
| Ricechip | LOC_Os09g38790.1 |
| KEGG | osa:4347855 dosa:Os09t0560900-01 |
| Entrez-Gene | 4347855 |