RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g38800.1 View Network Show in Genome Browser |
| Other Names | Os09g0561000 |
| Description | OsWAK88 - OsWAK pseudogene, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 22292349-22295586 Nucleotide Length: 2289 |
| Protein-coding | LOC_Os09g38800 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05630 LOC_Os06g48300 LOC_Os06g33549 LOC_Os07g32380 LOC_Os04g37904 LOC_Os04g56450 LOC_Os06g33530 LOC_Os02g55560 LOC_Os02g15594 LOC_Os06g44210 LOC_Os03g18150 More.. |
| Downstream Genes | LOC_Os10g39540 LOC_Os11g13820 LOC_Os12g33100 LOC_Os12g44390 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1861n |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g38800.1 |
| Rice Genome Annotation | LOC_Os09g38800.1 |
| Ricechip | LOC_Os09g38800.1 |
| KEGG | osa:9267048 dosa:Os09t0561000-01 |
| Entrez-Gene | 9267048 |