RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g39180.1 View Network Show in Genome Browser |
| Other Names | Os09g0565200 |
| Description | RNA recognition motif containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 22505003-22507555 Nucleotide Length: 969 |
| Protein-coding | LOC_Os09g39180 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g17580 LOC_Os03g10060 LOC_Os03g04780 LOC_Os02g15900 LOC_Os01g59060 LOC_Os06g01460 LOC_Os03g03360 LOC_Os02g15310 LOC_Os02g43600 LOC_Os04g38750 LOC_Os09g10760 More.. |
| Downstream Genes | LOC_Os11g23790 LOC_Os12g34890 LOC_Os11g34940 LOC_Os11g13850 LOC_Os12g38430 LOC_Os10g34380 LOC_Os12g17910 LOC_Os10g06130 LOC_Os12g02380 LOC_Os12g42980 LOC_Os11g41610 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR399e osa-miR399f osa-miR399g |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g39180.1 |
| Rice Genome Annotation | LOC_Os09g39180.1 |
| Ricechip | LOC_Os09g39180.1 |
| KEGG | osa:4347871 dosa:Os09t0565200-02 |
| Entrez-Gene | 4347871 |