RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g39260.1 View Network Show in Genome Browser |
| Other Names | Os09g0566050,Os09g0566000 |
| Description | prephenate dehydratase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 22561220-22565267 Nucleotide Length: 1698 |
| Protein-coding | LOC_Os09g39260 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g01820 LOC_Os03g54160 LOC_Os03g06200 LOC_Os07g41370 LOC_Os08g41950 LOC_Os06g04280 LOC_Os09g32948 LOC_Os06g07210 LOC_Os06g14620 LOC_Os05g51550 LOC_Os06g35050 More.. |
| Downstream Genes | LOC_Os10g36470 LOC_Os12g32240 LOC_Os10g38950 LOC_Os12g39070 |
| Pathways | |
|---|---|
| KEGG Pathways | rn01110 rn01100 rn00400 |
| Metacyc Pathways | PHESYN PWY-3462 |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g39260.1 |
| Rice Genome Annotation | LOC_Os09g39260.1 |
| Ricechip | LOC_Os09g39260.1 |
| KEGG | osa:4347877 dosa:Os09t0566050-00 |