RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g39420.1 View Network Show in Genome Browser |
| Other Names | Os09g0567700 |
| Description | WD domain, G-beta repeat domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 22666306-22671392 Nucleotide Length: 2928 |
| Protein-coding | LOC_Os09g39420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g48030 LOC_Os07g49010 LOC_Os02g49190 LOC_Os02g10060 LOC_Os07g43060 LOC_Os08g33100 LOC_Os07g36140 LOC_Os01g62230 LOC_Os05g06330 LOC_Os05g05230 LOC_Os07g31340 More.. |
| Downstream Genes | LOC_Os12g34510 LOC_Os12g25120 LOC_Os10g02630 LOC_Os12g39210 LOC_Os12g31810 LOC_Os12g43100 LOC_Os12g06620 LOC_Os10g42950 LOC_Os10g39410 LOC_Os12g43600 LOC_Os12g06810 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR167a-5p osa-miR167b osa-miR167c-5p osa-miR167d-5p osa-miR167e-5p osa-miR167f osa-miR167g osa-miR167h-5p osa-miR167i-5p osa-miR167j |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g39420.1 |
| Rice Genome Annotation | LOC_Os09g39420.1 |
| Ricechip | LOC_Os09g39420.1 |
| KEGG | osa:4347889 dosa:Os09t0567700-01 |
| Entrez-Gene | 4347889 |