RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os09g39540.1 View Network Show in Genome Browser |
| Other Names | Os09g0568800 |
| Description | 40S ribosomal protein S25, putative, expressed |
| Gene Attributes | Chromosome: Chr9 CDS Coordinates (5'-3'): 22701722-22703133 Nucleotide Length: 327 |
| Protein-coding | LOC_Os09g39540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g62350 LOC_Os05g38520 LOC_Os01g61814 LOC_Os04g35090 LOC_Os04g28180 LOC_Os05g30530 LOC_Os03g60400 LOC_Os02g34460 LOC_Os07g12250 LOC_Os01g59990 LOC_Os02g28810 More.. |
| Downstream Genes | LOC_Os11g11390 LOC_Os10g08930 LOC_Os10g27174 LOC_Os11g03400 LOC_Os12g03090 LOC_Os12g38000 LOC_Os10g32920 LOC_Os11g29190 LOC_Os12g03880 LOC_Os11g41610 LOC_Os11g04070 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os09g39540.1 |
| Rice Genome Annotation | LOC_Os09g39540.1 |
| Ricechip | LOC_Os09g39540.1 |
| KEGG | osa:4347899 dosa:Os09t0568800-01 |
| Entrez-Gene | 4347899 |