RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g01570.1 View Network Show in Genome Browser |
| Other Names | Os10g0104900 |
| Description | C-5 cytosine-specific DNA methylase, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 377147-382430 Nucleotide Length: 1116 |
| Protein-coding | LOC_Os10g01570 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g45760 LOC_Os09g36740 LOC_Os07g01490 LOC_Os01g70560 LOC_Os07g46540 LOC_Os08g44420 LOC_Os08g44410 LOC_Os06g41710 LOC_Os01g54420 |
| Downstream Genes | LOC_Os10g35580 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g01570.1 |
| Rice Genome Annotation | LOC_Os10g01570.1 |
| Ricechip | LOC_Os10g01570.1 |
| KEGG | osa:4347954 dosa:Os10t0104900-01 |
| Entrez-Gene | 4347954 |