RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g02040.1 View Network Show in Genome Browser |
| Other Names | Os10g0109300 |
| Description | peroxidase precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 655612-658907 Nucleotide Length: 1011 |
| Protein-coding | LOC_Os10g02040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g04820 LOC_Os08g35760 LOC_Os02g44320 LOC_Os05g10210 LOC_Os01g72290 LOC_Os07g35310 LOC_Os01g25500 LOC_Os01g73170 LOC_Os01g47780 LOC_Os01g47080 LOC_Os08g23180 More.. |
| Downstream Genes | LOC_Os11g27264 LOC_Os10g06000 LOC_Os10g05990 LOC_Os10g05980 LOC_Os11g26190 LOC_Os12g34524 LOC_Os12g01560 LOC_Os11g01570 LOC_Os11g30560 LOC_Os11g30360 LOC_Os11g02350 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Pathways | |
|---|---|
| Metacyc Pathways | PWY-5461 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g02040.1 |
| Rice Genome Annotation | LOC_Os10g02040.1 |
| Ricechip | LOC_Os10g02040.1 |
| KEGG | osa:4347962 dosa:Os10t0109300-01 |
| Entrez-Gene | 4347962 |