RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g06540.2 View Network Show in Genome Browser |
| Other Names | Os10g0154000 |
| Description | vesicle-associated membrane protein, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 3358011-3360554 Nucleotide Length: 411 |
| Protein-coding | LOC_Os10g06540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os08g01880 LOC_Os07g07000 LOC_Os02g32740 LOC_Os09g36976 LOC_Os06g07200 LOC_Os06g39050 LOC_Os03g57310 LOC_Os03g52650 LOC_Os02g11890 LOC_Os02g24080 LOC_Os06g09850 More.. |
| Downstream Genes | LOC_Os12g25120 LOC_Os12g44250 LOC_Os11g24610 LOC_Os10g13800 LOC_Os11g37480 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g06540.2 |
| Rice Genome Annotation | LOC_Os10g06540.2 |
| Ricechip | LOC_Os10g06540.2 |
| KEGG | osa:4348130 dosa:Os10t0154000-01 |
| Entrez-Gene | 4348130 |