RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g07229.1 View Network Show in Genome Browser |
| Other Names | Os10g0159800 |
| Description | dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 3793863-3804018 Nucleotide Length: 1212 |
| Protein-coding | LOC_Os10g07229 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g71300 LOC_Os04g30420 LOC_Os03g01190 LOC_Os01g54940 LOC_Os08g29170 LOC_Os05g24880 LOC_Os04g41960 LOC_Os01g66720 LOC_Os04g58090 LOC_Os09g28570 LOC_Os09g25960 More.. |
| Downstream Genes | LOC_Os11g01154 LOC_Os12g01160 LOC_Os12g31850 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR531b |
| Pathways | |
|---|---|
| KEGG Pathways | rn00071 rn00010 rn01100 rn01110 rn01120 rn00625 rn00980 rn00626 rn00350 rn00982 rn00830 |
| Metacyc Pathways | P127-PWY FERMENTATION-PWY PWY-3801 PWY66-21 PWY-5057 PWY-5082 PWY-5076 PWY-5078 PWY-5079 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g07229.1 |
| Rice Genome Annotation | LOC_Os10g07229.1 |
| Ricechip | LOC_Os10g07229.1 |
| KEGG | osa:4348152 dosa:Os10t0159800-01 |
| Entrez-Gene | 4348152 |