RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g08580.1 View Network Show in Genome Browser |
| Other Names | Os10g0167600 |
| Description | FAD binding domain of DNA photolyase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 4663129-4666991 Nucleotide Length: 1521 |
| Protein-coding | LOC_Os10g08580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g10990 LOC_Os06g45100 LOC_Os03g22330 LOC_Os09g36240 LOC_Os02g36380 LOC_Os04g37920 LOC_Os07g29220 LOC_Os06g23870 |
| Downstream Genes | LOC_Os12g16650 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1425-5p |
| Reference | |
|---|---|
| PubMed | 21251107 17397507 15965242 15960616 18235036 15653803 11006332 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g08580.1 |
| Rice Genome Annotation | LOC_Os10g08580.1 |
| Ricechip | LOC_Os10g08580.1 |
| KEGG | osa:9272017 dosa:Os10t0167600-01 |
| Entrez-Gene | 9272017 |