RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g10990.2 View Network Show in Genome Browser |
| Other Names | Os10g0188100 |
| Description | transcription initiation factor IIF, alpha subunit domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 6079970-6087844 Nucleotide Length: 1596 |
| Protein-coding | LOC_Os10g10990 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g05860 LOC_Os09g02284 LOC_Os01g56550 LOC_Os03g01230 LOC_Os05g43450 LOC_Os01g59140 LOC_Os07g07610 LOC_Os02g02510 LOC_Os03g44484 LOC_Os05g33240 LOC_Os05g32430 More.. |
| Downstream Genes | LOC_Os12g37370 LOC_Os11g08940 LOC_Os10g25770 LOC_Os10g35550 LOC_Os11g14430 LOC_Os10g31900 LOC_Os11g28350 LOC_Os11g31890 LOC_Os12g44390 LOC_Os12g30020 LOC_Os10g34520 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR414 osa-miR2873a |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g10990.2 |
| Rice Genome Annotation | LOC_Os10g10990.2 |
| Ricechip | LOC_Os10g10990.2 |
| KEGG | osa:4348225 dosa:Os10t0188100-03 |
| Entrez-Gene | 4348225 |