RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g11200.1 View Network Show in Genome Browser |
| Other Names | Os10g0189600 |
| Description | aminotransferase, classes I and II, domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 6208918-6214147 Nucleotide Length: 1449 |
| Protein-coding | LOC_Os10g11200 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g70380 LOC_Os01g70370 LOC_Os01g70360 LOC_Os07g42600 LOC_Os08g43190 LOC_Os05g28750 LOC_Os01g19840 LOC_Os02g46130 LOC_Os02g14110 LOC_Os02g47940 LOC_Os09g28050 More.. |
| Downstream Genes | LOC_Os11g31640 LOC_Os12g03960 LOC_Os10g25130 LOC_Os10g41150 LOC_Os10g25140 LOC_Os11g04160 LOC_Os11g35040 LOC_Os11g07910 LOC_Os11g42510 LOC_Os12g07670 LOC_Os12g44150 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00600 rn01100 rn00780 |
| Metacyc Pathways | SPHINGOLIPID-SYN-PWY PWY-3701 BIOTIN-SYNTHESIS-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g11200.1 |
| Rice Genome Annotation | LOC_Os10g11200.1 |
| Ricechip | LOC_Os10g11200.1 |
| KEGG | osa:4348231 dosa:Os10t0189600-01 |
| Entrez-Gene | 4348231 |