RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g11580.1 View Network Show in Genome Browser |
| Other Names | Os10g0191900 |
| Description | histone-like transcription factor and archaeal histone, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 6404227-6405891 Nucleotide Length: 1008 |
| Protein-coding | LOC_Os10g11580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os07g11650 LOC_Os07g12080 LOC_Os02g16820 LOC_Os07g42390 LOC_Os06g51084 LOC_Os03g55740 LOC_Os07g11630 LOC_Os02g25640 LOC_Os07g11380 LOC_Os07g11360 LOC_Os07g10580 More.. |
| Downstream Genes | LOC_Os10g26060 LOC_Os11g31330 LOC_Os12g42670 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR418 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g11580.1 |
| Rice Genome Annotation | LOC_Os10g11580.1 |
| Ricechip | LOC_Os10g11580.1 |
| KEGG | osa:4348238 dosa:Os10t0191900-00 |
| Entrez-Gene | 4348238 |