RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g17280.1 View Network Show in Genome Browser |
| Other Names | Os10g0320400 |
| Description | ATP synthase gamma chain, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 8691852-8697228 Nucleotide Length: 975 |
| Protein-coding | LOC_Os10g17280 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g47980 LOC_Os01g49190 LOC_Os09g08910 LOC_Os06g43850 LOC_Os07g31300 LOC_Os06g02980 LOC_Os03g55874 LOC_Os03g48471 LOC_Os04g16740 LOC_Os06g39740 LOC_Os01g08350 More.. |
| Downstream Genes | LOC_Os12g23630 LOC_Os10g21240 LOC_Os12g10570 LOC_Os12g19430 LOC_Os11g40140 LOC_Os10g42840 LOC_Os11g03900 LOC_Os12g03720 LOC_Os10g41930 LOC_Os10g37690 LOC_Os11g33240 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn01100 rn00680 rn00190 rn00195 |
| Metacyc Pathways | PWY-6126 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g17280.1 |
| Rice Genome Annotation | LOC_Os10g17280.1 |
| Ricechip | LOC_Os10g17280.1 |
| KEGG | osa:4348305 dosa:Os10t0320400-01 |
| Entrez-Gene | 4348305 |