RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g22380.1 View Network Show in Genome Browser |
| Other Names | Os10g0369000 |
| Description | glutamyl-tRNA synthetase, cytoplasmic, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 11581250-11585288 Nucleotide Length: 2142 |
| Protein-coding | LOC_Os10g22380 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os09g30412 LOC_Os03g50510 LOC_Os09g30418 LOC_Os08g39140 LOC_Os01g41030 LOC_Os02g11830 LOC_Os04g58580 LOC_Os05g08990 LOC_Os05g18750 LOC_Os01g08560 LOC_Os06g31210 More.. |
| Downstream Genes | LOC_Os12g03720 LOC_Os11g03900 LOC_Os10g26050 LOC_Os10g35290 LOC_Os12g42876 LOC_Os12g42884 LOC_Os11g39670 LOC_Os12g25710 LOC_Os11g29400 LOC_Os12g42980 LOC_Os11g14430 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00860 rn00970 rn01100 rn01110 |
| Metacyc Pathways | TRNA-CHARGING-PWY PWY-5188 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g22380.1 |
| Rice Genome Annotation | LOC_Os10g22380.1 |
| Ricechip | LOC_Os10g22380.1 |
| KEGG | osa:4348464 dosa:Os10t0369000-01 |
| Entrez-Gene | 4348464 |