RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g23090.2 View Network Show in Genome Browser |
| Other Names | Os10g0377300 |
| Description | homeobox associated leucine zipper, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 12041836-12043235 Nucleotide Length: 846 |
| Protein-coding | LOC_Os10g23090 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g45290 LOC_Os02g54730 LOC_Os01g59360 LOC_Os05g41270 LOC_Os04g58990 LOC_Os05g43570 LOC_Os01g43410 LOC_Os05g50810 LOC_Os07g33110 LOC_Os06g07830 LOC_Os02g55970 More.. |
| Downstream Genes | LOC_Os11g04170 LOC_Os12g03970 LOC_Os12g43340 LOC_Os12g19290 LOC_Os10g33640 LOC_Os12g12860 LOC_Os12g38570 LOC_Os10g37670 LOC_Os10g35930 LOC_Os11g19240 LOC_Os10g36710 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR166k-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g23090.2 |
| Rice Genome Annotation | LOC_Os10g23090.2 |
| Ricechip | LOC_Os10g23090.2 |
| KEGG | osa:4348492 dosa:Os10t0377300-01 |
| Entrez-Gene | 4348492 |