RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g25310.1 View Network Show in Genome Browser |
| Other Names | Os10g0392600 |
| Description | SPX domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 13088805-13091555 Nucleotide Length: 834 |
| Protein-coding | LOC_Os10g25310 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g40120 LOC_Os03g61200 LOC_Os07g10350 LOC_Os10g25110 LOC_Os05g01310 LOC_Os04g52200 LOC_Os05g51490 LOC_Os01g40340 LOC_Os03g22890 LOC_Os05g22920 LOC_Os02g50370 More.. |
| Downstream Genes | LOC_Os11g19250 LOC_Os10g42320 LOC_Os11g25260 LOC_Os10g30090 LOC_Os11g25330 LOC_Os10g42790 LOC_Os10g28040 LOC_Os10g30790 LOC_Os12g03822 LOC_Os11g03990 LOC_Os11g03290 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g25310.1 |
| Rice Genome Annotation | LOC_Os10g25310.1 |
| Ricechip | LOC_Os10g25310.1 |
| KEGG | osa:4348535 dosa:Os10t0392600-01 |
| Entrez-Gene | 4348535 |