RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g25930.1 View Network Show in Genome Browser |
| Other Names | Os10g0399100 |
| Description | cystathionine gamma-synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 13438132-13439638 Nucleotide Length: 1302 |
| Protein-coding | LOC_Os10g25930 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g07570 LOC_Os03g54790 LOC_Os02g50350 LOC_Os06g46372 LOC_Os07g15880 LOC_Os03g20750 LOC_Os05g35730 LOC_Os03g52400 LOC_Os06g45670 LOC_Os07g12770 LOC_Os03g62490 More.. |
| Downstream Genes | LOC_Os10g36760 LOC_Os11g20790 LOC_Os11g11050 LOC_Os10g36780 LOC_Os12g13380 LOC_Os12g41250 LOC_Os10g37690 LOC_Os12g13390 LOC_Os11g26850 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 rn00450 rn00920 rn01110 |
| Metacyc Pathways | PWY-801 HOMOSER-METSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g25930.1 |
| Rice Genome Annotation | LOC_Os10g25930.1 |
| Ricechip | LOC_Os10g25930.1 |
| KEGG | dosa:Os10t0399100-00 |