RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g28040.1 View Network Show in Genome Browser |
| Other Names | Os10g0415900 |
| Description | histone acetyltransferase GCN5, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 14549109-14555547 Nucleotide Length: 1536 |
| Protein-coding | LOC_Os10g28040 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g53960 LOC_Os01g32750 LOC_Os06g44030 LOC_Os03g29470 LOC_Os01g63940 LOC_Os07g45064 LOC_Os03g60130 LOC_Os09g26180 LOC_Os03g49230 LOC_Os09g31310 LOC_Os03g45410 More.. |
| Downstream Genes | LOC_Os12g39070 LOC_Os10g35680 LOC_Os11g36390 LOC_Os10g28230 LOC_Os10g42950 LOC_Os10g29660 LOC_Os12g34510 LOC_Os10g39410 LOC_Os12g25120 LOC_Os11g05730 LOC_Os11g40140 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g28040.1 |
| Rice Genome Annotation | LOC_Os10g28040.1 |
| Ricechip | LOC_Os10g28040.1 |
| KEGG | osa:4348629 dosa:Os10t0415900-01 |
| Entrez-Gene | 4348629 |