RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g30550.1 View Network Show in Genome Browser |
| Other Names | Os10g0442100 |
| Description | tRNA methyltransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 15884727-15893608 Nucleotide Length: 2022 |
| Protein-coding | LOC_Os10g30550 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g03720 LOC_Os04g38600 LOC_Os08g03290 LOC_Os01g62420 LOC_Os06g45590 LOC_Os02g07490 LOC_Os04g40950 LOC_Os02g38920 LOC_Os09g36450 LOC_Os04g19740 LOC_Os03g14450 More.. |
| Downstream Genes | LOC_Os11g07020 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR812a osa-miR812b osa-miR812c osa-miR812d osa-miR812e |
| Pathways | |
|---|---|
| KEGG Pathways | rn00010 rn00710 rn01100 rn01110 rn01120 |
| Metacyc Pathways | P124-PWY ANAEROFRUCAT-PWY GLUCONEO-PWY PWY-1042 CALVIN-PWY PWY-3801 GLYCOLYSIS |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g30550.1 |
| Rice Genome Annotation | LOC_Os10g30550.1 |
| Ricechip | LOC_Os10g30550.1 |
| KEGG | osa:4348728 dosa:Os10t0442100-00 |
| Entrez-Gene | 4348728 |