RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g31856.1 View Network Show in Genome Browser |
| Other Names | Os10g0456900 |
| Description | midasin-related, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 16710177-16715537 Nucleotide Length: 3594 |
| Protein-coding | LOC_Os10g31856 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g43374 LOC_Os08g10649 LOC_Os04g46310 LOC_Os07g10350 LOC_Os03g50120 LOC_Os07g15880 LOC_Os01g40250 LOC_Os03g53510 LOC_Os03g21530 LOC_Os03g18840 LOC_Os02g48620 More.. |
| Downstream Genes | LOC_Os12g07300 LOC_Os11g08940 LOC_Os12g04220 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR166k-5p osa-miR1847.1 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g31856.1 |
| Rice Genome Annotation | LOC_Os10g31856.1 |
| Ricechip | LOC_Os10g31856.1 |
| KEGG | osa:4348797 dosa:Os10t0456900-01 |
| Entrez-Gene | 4348797 |