RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g31864.1 View Network Show in Genome Browser |
| Other Names | Os10g0456950 |
| Description | expressed protein |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 16716230-16742534 Nucleotide Length: 7218 |
| Protein-coding | LOC_Os10g31864 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g13970 LOC_Os03g49210 LOC_Os04g53770 LOC_Os01g27730 LOC_Os03g51140 LOC_Os06g09570 LOC_Os02g05340 LOC_Os07g01920 LOC_Os03g22890 LOC_Os10g01540 LOC_Os06g37180 More.. |
| Downstream Genes | LOC_Os12g03720 LOC_Os11g14220 LOC_Os11g04070 LOC_Os12g03880 LOC_Os11g03900 LOC_Os11g38170 LOC_Os10g35290 LOC_Os11g06750 LOC_Os12g07010 LOC_Os11g24610 LOC_Os11g04220 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR399a osa-miR399b osa-miR399c osa-miR399d osa-miR399i |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g31864.1 |
| Rice Genome Annotation | LOC_Os10g31864.1 |
| Ricechip | LOC_Os10g31864.1 |
| KEGG | dosa:Os10t0456950-00 |