RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g32300.1 View Network Show in Genome Browser |
| Other Names | Os10g0460900 |
| Description | tetratricopeptide repeat domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 16951189-16956917 Nucleotide Length: 1095 |
| Protein-coding | LOC_Os10g32300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g17580 LOC_Os09g36740 LOC_Os07g49000 LOC_Os07g06710 LOC_Os04g59394 LOC_Os03g22140 LOC_Os03g19200 LOC_Os06g41750 LOC_Os03g15740 LOC_Os02g51730 LOC_Os05g31062 More.. |
| Downstream Genes | LOC_Os10g32400 LOC_Os10g32348 LOC_Os12g41190 LOC_Os10g34540 LOC_Os11g05090 LOC_Os10g36250 LOC_Os12g05090 LOC_Os12g07480 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1857-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g32300.1 |
| Rice Genome Annotation | LOC_Os10g32300.1 |
| Ricechip | LOC_Os10g32300.1 |
| KEGG | osa:4348815 dosa:Os10t0460900-00 |
| Entrez-Gene | 4348815 |