RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g32348.1 View Network Show in Genome Browser |
| Other Names | Os10g0461100 |
| Description | PsbP, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 16971660-16976748 Nucleotide Length: 843 |
| Protein-coding | LOC_Os10g32348 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os10g32300 LOC_Os03g17580 LOC_Os01g48690 LOC_Os03g14040 LOC_Os03g08080 LOC_Os04g45490 LOC_Os09g36740 LOC_Os07g49000 LOC_Os07g06710 LOC_Os04g59394 LOC_Os03g22140 More.. |
| Downstream Genes | LOC_Os10g32400 LOC_Os12g41190 LOC_Os10g34540 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1857-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g32348.1 |
| Rice Genome Annotation | LOC_Os10g32348.1 |
| Ricechip | LOC_Os10g32348.1 |
| KEGG | osa:4348816 dosa:Os10t0461100-01 |
| Entrez-Gene | 4348816 |