RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g32570.1 View Network Show in Genome Browser |
| Other Names | Os10g0463100 |
| Description | tRNA synthetase class I family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 17063214-17066601 Nucleotide Length: 1476 |
| Protein-coding | LOC_Os10g32570 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008219 | cell death | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g25400 LOC_Os08g19610 LOC_Os07g29390 LOC_Os08g29370 LOC_Os03g10400 LOC_Os03g11120 LOC_Os06g04000 LOC_Os01g53890 LOC_Os03g62610 LOC_Os05g05740 LOC_Os02g02860 More.. |
| Downstream Genes | LOC_Os11g13420 LOC_Os11g32240 LOC_Os11g16770 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g32570.1 |
| Rice Genome Annotation | LOC_Os10g32570.1 |
| Ricechip | LOC_Os10g32570.1 |
| KEGG | osa:4348825 dosa:Os10t0463100-00 |
| Entrez-Gene | 4348825 |