RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g33960.1 View Network Show in Genome Browser |
| Other Names | Os10g0480200 |
| Description | START domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 18085536-18092499 Nucleotide Length: 2523 |
| Protein-coding | LOC_Os10g33960 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0008289 | lipid binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os10g33930 LOC_Os10g31770 |
| Downstream Genes | LOC_Os10g35250 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR166k-3p osa-miR166l-3p osa-miR166a-3p osa-miR166b-3p osa-miR166c-3p osa-miR166d-3p osa-miR166f osa-miR166g-3p osa-miR166h-3p osa-miR166j-3p osa-miR166m osa-miR166i-3p |
| Reference | |
|---|---|
| PubMed | 18567825 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g33960.1 |
| Rice Genome Annotation | LOC_Os10g33960.1 |
| Ricechip | LOC_Os10g33960.1 |
| KEGG | osa:4348919 dosa:Os10t0480200-01 |
| Entrez-Gene | 4348919 |