RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g34540.1 View Network Show in Genome Browser |
| Other Names | Os10g0486900 |
| Description | tetratricopeptide repeat protein 1, putative, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 18420713-18425433 Nucleotide Length: 711 |
| Protein-coding | LOC_Os10g34540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os06g41750 LOC_Os07g27180 LOC_Os08g39080 LOC_Os01g43030 LOC_Os10g32300 LOC_Os09g36740 LOC_Os08g44510 LOC_Os03g15740 LOC_Os02g43920 LOC_Os01g47340 LOC_Os07g29360 More.. |
| Downstream Genes | LOC_Os11g16540 LOC_Os12g32240 LOC_Os12g03090 LOC_Os11g03400 LOC_Os12g39340 LOC_Os10g35550 LOC_Os10g42840 LOC_Os12g09280 LOC_Os11g06750 LOC_Os12g07010 |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g34540.1 |
| Rice Genome Annotation | LOC_Os10g34540.1 |
| Ricechip | LOC_Os10g34540.1 |
| KEGG | osa:4348950 dosa:Os10t0486900-01 |
| Entrez-Gene | 4348950 |