RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os10g34750.2 View Network Show in Genome Browser |
| Other Names | Os10g0489200 |
| Description | LIG1 - Putative DNA ligase I, expressed |
| Gene Attributes | Chromosome: Chr10 CDS Coordinates (5'-3'): 18552952-18559327 Nucleotide Length: 2433 |
| Protein-coding | LOC_Os10g34750 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g46270 LOC_Os06g07210 LOC_Os02g56100 LOC_Os02g56130 LOC_Os03g57870 LOC_Os01g64820 LOC_Os02g04050 LOC_Os02g30800 LOC_Os07g44630 LOC_Os05g06840 LOC_Os04g51700 More.. |
| Downstream Genes | LOC_Os11g08330 LOC_Os11g29390 LOC_Os12g07720 LOC_Os11g03430 LOC_Os12g03130 LOC_Os11g36390 LOC_Os12g26060 LOC_Os11g11070 LOC_Os12g37370 LOC_Os11g08940 LOC_Os12g09120 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os10g34750.2 |
| Rice Genome Annotation | LOC_Os10g34750.2 |
| Ricechip | LOC_Os10g34750.2 |
| KEGG | osa:4348965 dosa:Os10t0489200-01 |
| Entrez-Gene | 4348965 |